PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART03G14970.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 295aa    MW: 32353.1 Da    PI: 9.3279
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART03G14970.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.93.8e-16104156156
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      s y+GV+++++ grW A+I  +     +k  +lg+f t+eeAa+a++ a++k++g+
  OBART03G14970.1 104 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDVAALKFRGA 156
                      57****************988532...5*************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103214.117469IPR001471AP2/ERF domain
CDDcd000181.70E-121369No hitNo description
PfamPF008473.4E-41361IPR001471AP2/ERF domain
SuperFamilySSF541713.2E-101370IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.9E-91370IPR001471AP2/ERF domain
SMARTSM003806.8E-101375IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-18104164IPR016177DNA-binding domain
PfamPF008472.8E-11104155IPR001471AP2/ERF domain
CDDcd000181.59E-11104165No hitNo description
PROSITE profilePS5103219.48105163IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-19105163IPR001471AP2/ERF domain
SMARTSM003801.4E-32105169IPR001471AP2/ERF domain
PRINTSPR003673.9E-5106117IPR001471AP2/ERF domain
PRINTSPR003673.9E-5145165IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MSPPTNGAIS LAHRWTGRYE AHLWDNTCRR EGQKRKGRQG GYDIEDKAAR AYDLAALKYW  60
GASATTNFPK ESYVKEIEEM QKMSKQELVA SLRRKSSGFS RGASIYRGVT RHHQHGRWQA  120
RIGRVAGNKD LYLGTFATEE EAAEAYDVAA LKFRGANAVT NFEPSRYNLE AISQSDLPIS  180
VSGRRHNSSS NSNNPAPEAG GQITLMSSPP ISQQSSSAPP YLLHNLLQFQ PCGPPYAPPP  240
PPPPQALPLP GSYNFAEPVG FYWPYGDGEE QKVQLNSNMV GMASGGFLHL ANAAN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1098390.0AK109839.1 Oryza sativa Japonica Group cDNA clone:002-148-D11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629274.11e-161PREDICTED: AP2-like ethylene-responsive transcription factor AIL7
SwissprotQ6PQQ43e-96BBM_ARATH; AP2-like ethylene-responsive transcription factor BBM
TrEMBLA0A0D3FHP80.0A0A0D3FHP8_9ORYZ; Uncharacterized protein
STRINGBGIOSGA010867-PA1e-162(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135792631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.27e-78AINTEGUMENTA-like 6